Any way to make the Enhaced Edition Trilogy use Steam Cloud?

Every week I have to travel because of work, so I often play in two different machines and since the game saves in another folder when you install the EET mod, the files are not synchronized.

So, is there any way around it? Maybe a setting indicating where the save folder is so I can make the game save on the older location again?

I don't care about losing the vanilla saves, if that would be a concern.